singlecellmultiomics.statistic package¶
Submodules¶
singlecellmultiomics.statistic.allele module¶
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class
singlecellmultiomics.statistic.allele.
AlleleHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.cellreadcount module¶
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class
singlecellmultiomics.statistic.cellreadcount.
CellReadCount
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.conversions module¶
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class
singlecellmultiomics.statistic.conversions.
ConversionMatrix
(args, process_reads=200000)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.datatype module¶
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class
singlecellmultiomics.statistic.datatype.
DataTypeHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.fragmentsize module¶
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class
singlecellmultiomics.statistic.fragmentsize.
FragmentSizeHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.mappingquality module¶
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class
singlecellmultiomics.statistic.mappingquality.
MappingQualityHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.methylation module¶
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class
singlecellmultiomics.statistic.methylation.
MethylationContextHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.oversequencing module¶
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class
singlecellmultiomics.statistic.oversequencing.
OversequencingHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.plate module¶
singlecellmultiomics.statistic.readcount module¶
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class
singlecellmultiomics.statistic.readcount.
ReadCount
(args)[source]¶
singlecellmultiomics.statistic.rejectionreasons module¶
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class
singlecellmultiomics.statistic.rejectionreasons.
RejectionReasonHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.scchicligation module¶
singlecellmultiomics.statistic.statistic module¶
-
class
singlecellmultiomics.statistic.statistic.
Statistic
(args)[source]¶ Bases:
object
Statistic object, initialised with arguments
Parameters: args (argparse object) –
singlecellmultiomics.statistic.tag module¶
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class
singlecellmultiomics.statistic.tag.
TagHistogram
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram
singlecellmultiomics.statistic.trimming module¶
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class
singlecellmultiomics.statistic.trimming.
TrimmingStats
(args)[source]¶ Bases:
singlecellmultiomics.statistic.statistic.StatisticHistogram