singlecellmultiomics.barcodeFileParser package

Submodules

singlecellmultiomics.barcodeFileParser.barcodeFileParser module

class singlecellmultiomics.barcodeFileParser.barcodeFileParser.BarcodeParser(barcodeDirectory='barcodes', hammingDistanceExpansion=0, spaceFill=False)[source]

Bases: object

addBarcode(barcodeFileAlias, barcode, index, hammingDistance=0, originBarcode=None)[source]
expand(hammingDistanceExpansion, alias, reportCollisions=True, spaceFill=None)[source]
expand_old(hammingDistanceExpansion, alias, reportCollisions=True, spaceFill=None)[source]
getBarcodeMapping()[source]
getIndexCorrectedBarcodeAndHammingDistance(barcode, alias)[source]
getTargetCount(barcodeFileAlias)[source]
list(showBarcodes=5)[source]
singlecellmultiomics.barcodeFileParser.barcodeFileParser.hamming_circle(s, n, alphabet)[source]

Module contents